PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012226
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family YABBY
Protein Properties Length: 169aa    MW: 18820.6 Da    PI: 8.1249
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012226genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY131.79.3e-416814396170
      YABBY  96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                ++s+k++      ++   + v+rPPekrqrvPsayn+fikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl
  Cla012226  68 NNSNKMEIRAPTTIAAEERvVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGL 143
                444555555555554444449*****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.7E-3964143IPR006780YABBY protein
SuperFamilySSF470955.5E-884136IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.3E-491137IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAASCIDIAP EQLCYIPCNF CNIVLASDVG TAQICGPSIW LLPFSLFLGK IFSGGDFQGD  60
FGSSSKCNNS NKMEIRAPTT IAAEERVVNR PPEKRQRVPS AYNQFIKEEI QRIKASNPEI  120
SHREAFSTAA KNWAHFPRIH FGLMLETNNQ VKLDDGSERL MTRAALLNK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150030.14e-90PREDICTED: axial regulator YABBY 5-like
SwissprotQ8GW462e-56YAB5_ARATH; Axial regulator YABBY 5
TrEMBLD7TC404e-73D7TC40_VITVI; Putative uncharacterized protein
STRINGVIT_11s0016g05590.t011e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-53YABBY family protein